Wintery Knight

…integrating Christian faith and knowledge in the public square

Four ways that the progress of science conflicts with naturalistic speculations

When people ask me whether the progress of science is more compatible with theism or atheism, I offer the following four basic pieces of scientific evidence that are more compatible with theism than atheism.

Here are the four pieces of evidence best explained by a Creator/Designer:

  1. the kalam argument from the origin of the universe
  2. the cosmic fine-tuning (habitability) argument
  3. the biological information in the first replicator (origin of life)
  4. the sudden origin of all of the different body plans in the fossil record (Cambrian explosion)

And I point to specific examples of recent discoveries that confirm those four arguments. Here are just a few of them:

  1. An explanation of 3 of the 6 experimental evidences for the Big Bang cosmology (From an article from Caltech)
  2. Examples of cosmic fine-tuning to allow the existence of conscious, embodied life (From the New Scientist)
  3. Evidence that functional protein sequences are beyond the reach of chance, (from Doug Axe’s JMB article)
  4. Evidence showing that Ediacaran fauna are not precursors to the Cambrian fossils, (from the journal Nature)

Atheists will typically reply to the recent scientific discoveries that overturned their speculations like this:

  1. Maybe the Big Bang cosmology will be overturned by the Big Crunch/Bounce so that the universe is eternal and has no cause
  2. Maybe there is a multiverse: an infinite number of unobservable, untestable universes which makes our finely-tuned one more probable
  3. Maybe the origin of life could be the result of chance and natural processes
  4. Maybe we will find a seamless chain of fossils that explain how the Cambrian explosion occurred slowly, over a long period time

Ever heard any of these responses?

Below I list some resources to help you to respond to the four responses of atheists to the experimental data.

1) The Big Crunch/Bounce has been disproved theoretically and experimentally.

Theoretically:

Nature 302, 505 – 506 (07 April 1983); doi:10.1038/302505a0

The impossibility of a bouncing universe

ALAN H. GUTH* & MARC SHER†

*Center for Theoretical Physics, Laboratory for Nuclear Science and Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA

†Department of Physics, University of California, Irvine, California 92717, USA

Petrosian1 has recently discussed the possibility that the restoration of symmetry at grand unification in a closed contracting Robertson–Walker universe could slow down and halt the contraction, causing the universe to bounce. He then went on to discuss the possibility that our universe has undergone a series of such bounces. We disagree with this analysis. One of us (M.S.) has already shown2 that if a contracting universe is dominated by radiation, then a bounce is impossible. We will show here two further results: (1) entropy considerations imply that the quantity S (defined in ref. 1 and below), which must decrease by ~1075 to allow the present Universe to bounce, can in fact decrease by no more than a factor of ~2; (2) if the true vacuum state has zero energy density, then a universe which is contracting in its low temperature phase can never complete a phase transition soon enough to cause a bounce.

Experimentally:

The universe is not only expanding, but that expansion appears to be speeding up. And as if that discovery alone weren’t strange enough, it implies that most of the energy in the cosmos is contained in empty space — a concept that Albert Einstein considered but discarded as his “biggest blunder.” The new findings have been recognized as 1998’s top scientific breakthrough by Science magazine.

[...]The flood of findings about the universe’s expansion rate is the result of about 10 years of study, said Saul Perlmutter, team leader of the Supernova Cosmology Project at Lawrence Berkeley National Laboratory.

Perlmutter and others found such a yardstick in a particular kind of exploding star known as a Type 1A supernova. Over the course of several years, the astronomers developed a model to predict how bright such a supernova would appear at any given distance. Astronomers recorded dozens of Type 1A supernovae and anxiously matched them up with redshifts to find out how much the universe’s expansion was slowing down.

To their surprise, the redshift readings indicated that the expansion rate for distant supernovae was lower than the expansion rate for closer supernovae, Perlmutter said. On the largest scale imaginable, the universe’s galaxies appear to be flying away from each other faster and faster as time goes on.

“What we have found is that there is a ‘dark force’ that permeates the universe and that has overcome the force of gravity,” said Nicholas Suntzeff of the Cerro Tololo Inter-American Observatory, who is the co-founder of another group called the High-z Supernova Search Team. “This result is so strange and unexpected that it perhaps is only believable because two independent international groups have found the same effect in their data.”

There has only been one creation of the universe, and the universe will never reverse its expansion, so that it could oscillate eternally. That view is popular, perhaps in part because many people watched videos of Carl Sagan speculating about it in public school classrooms, but all it was was idle naturalistic speculation, (Sagan was a naturalist, and held out hope that science would vindicate naturalism), and has been contradicted by good experimental science. You should be familiar with the 3 evidences for the Big Bang (redshift, light element abundances (helium/hydrogen) and the cosmic microwave background radiation. There are others, (radioactive element abundances, second law of thermodynamics, stellar lifecycle), but those are the big three. Point out how the experimental evidence for the Big Bang has piled up, making the problem even worse for the eternal-universe naturalists.

2) The multiverse has not been tested experimentally, it’s pure speculation.

Speculation:

Multiverse thinking or the belief in the existence of parallel universes is more philosophy or science fiction than science. ”Cosmology must seem odd to scientists in other fields”.

George Ellis, a well-known mathematician and cosmologist, who for instance has written a book with Stephen Hawking, is sceptical of the idea that our universe is just another universe among many others.

A few weeks ago, Ellis, professor emeritus of applied mathematics at the University of Cape Town, reviewed Brian Greene’s book The Hidden Reality: Parallel Universes and the Deep Laws of the Cosmos (Knopf/Allen Lane, 2011) in the journal Nature. He is not at all convinced that the multiverse hypothesis is credible: ”Greene is not presenting aspects of a known reality; he is telling of unproven theoretical possibilities.”

According to professor Ellis, there is no evidence of multiverses, they cannot be tested and they are not science.

Ellis is not the only multiverse sceptic in this universe. A few months ago, science writer John Horgan wrote a column in Scientific American, expressing his doubt in multiverses.

When you get into a debate, you must never ever let the other side get away with asserting something they have no evidence for. Call them on it – point out that they have no evidence, and then hammer them with evidence for your point. Pile up cases of fine-tuning on top of each other and continuously point out that they have no experimental evidence for their speculations. Point out that more evidence we get, the more cases of fine-tuning we find, and the tougher the problem gets for naturalists. There is no evidence for a multiverse, but there is evidence for fine-tuning. TONS OF IT.

3) Naturalistic theories for the origin of life have two problems: can’t make the amino acids in an oxydized atmosphere and can’t make protein and DNA sequences by chance in the time available.

Building blocks:

The oxidation state of Hadean magmas and implications for early Earth’s atmosphere

Dustin Trail, E. Bruce Watson & Nicholas D. Tailby

Nature 480, 79–82 (01 December 2011) doi:10.1038/nature10655

[...]These results suggest that outgassing of Earth’s interior later than ~200?Myr into the history of Solar System formation would not have resulted in a reducing atmosphere.

Functional protein sequences:

J Mol Biol. 2004 Aug 27;341(5):1295-315.

Estimating the prevalence of protein sequences adopting functional enzyme folds.

Axe DD.

The Babraham Institute, Structural Biology Unit, Babraham Research Campus, Cambridge CB2 4AT, UK. doug.axe@bbsrc.ac.uk

Proteins employ a wide variety of folds to perform their biological functions. How are these folds first acquired? An important step toward answering this is to obtain an estimate of the overall prevalence of sequences adopting functional folds.

[...]Starting with a weakly functional sequence carrying this signature, clusters of ten side-chains within the fold are replaced randomly, within the boundaries of the signature, and tested for function. The prevalence of low-level function in four such experiments indicates that roughly one in 10(64) signature-consistent sequences forms a working domain. Combined with the estimated prevalence of plausible hydropathic patterns (for any fold) and of relevant folds for particular functions, this implies the overall prevalence of sequences performing a specific function by any domain-sized fold may be as low as 1 in 10(77), adding to the body of evidence that functional folds require highly extraordinary sequences.

So atheists are in double jeopardy here. They don’t have a way to build the Scrabble letters needed for life, and they don’t have a way to form the Scrabble letters into meaningful words and sentences. Point out that the more research we do, the tougher the problem gets to solve for naturalists, and the more it looks like an effect of intelligence. Write out the calculations for them.

4) The best candidate to explain the sudden origin of the Cambrian era fossils was the Ediacaran fauna, but those are now recognized as not being precursors to the Cambrian fossils.

Science Daily reports on a paper from the peer-reviewed journal Science:

Evidence of the single-celled ancestors of animals, dating from the interval in Earth’s history just before multicellular animals appeared, has been discovered in 570 million-year-old rocks from South China by researchers from the University of Bristol, the Swedish Museum of Natural History, the Paul Scherrer Institut and the Chinese Academy of Geological Sciences.

[...]This X-ray microscopy revealed that the fossils had features that multicellular embryos do not, and this led the researchers to the conclusion that the fossils were neither animals nor embryos but rather the reproductive spore bodies of single-celled ancestors of animals.

Professor Philip Donoghue said: “We were very surprised by our results — we’ve been convinced for so long that these fossils represented the embryos of the earliest animals — much of what has been written about the fossils for the last ten years is flat wrong. Our colleagues are not going to like the result.”

Professor Stefan Bengtson said: “These fossils force us to rethink our ideas of how animals learned to make large bodies out of cells.”

The trend is that there is no evolutionary explanation for the body plans that emerged in the Cambrian era. If you want to make the claim that “evolution did it”, then you have to produce the data today. Not speculations about the future. The data we have today says no to naturalism. The only way to affirm naturalistic explanations for the evidence we have is by faith. But rational people know that we need to minimize our leaps of faith, and go with the simplest and most reasonable explanation – an intelligence is the best explanation responsible for rapid generation of biological information.

Conclusion

I do think it’s important for Christians to focus more on scientific apologetics and to focus their academic careers in scientific fields. So often I look at Christian blogs, and I see way too much G. K. Chesterton, Francis Chan and other untestable, ineffective jibber-jabber. We need to bring the hard science, and stop making excuses about not being able to understand it because it’s too hard. It’s not too hard. Everyone can understand “Who Made God?” by Edgar Andrews – start with that! Then get Lee Strobel’s “The Case for a Creator“. That’s more than enough for the average Christian on science apologetics. We all have to do our best to learn what works. You don’t want to be anti-science and pro-speculation like atheists are. I recommend reading Uncommon Descent and Evolution News every day for a start.

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Michael Ruse debates Stephen C. Meyer on intelligent design and evolution on NPR

Details: (from NPR web site)

About one third of Americans believe in intelligent design, according to a recent Gallup poll. That’s the idea that humans evolved over time from lesser life forms – with the process guided by God. It’s added a new dimension to the old debate over where humans come from and raised serious concern in the scientific world about mixing faith with science.

  • Stephen C. Meyer, author of Darwin’s Doubt: The Explosive Origin of Animal Life and the Case for Intelligent Design
  • Michael Ruse, Director of the History and Philosophy of Science Program at Florida State University

The MP3 file is here. (28 minutes)

The following summary is rated S for Slightly Snarky. Reader discretion is advised.

Topics:

  • Moderator: (to Meyer) define creationism, evolution, and intelligent design
  • Meyer: creationism is based on an interpretation of the Bible
  • Meyer: evolution is an unguided process of mutation and selection that produces organisms
  • Meyer: intelligent design is the idea that the best explanation for certain features of life
  • Moderator: (to Ruse) Where do you disagree?
  • Ruse: Intelligent design is similar to creationism, but I won’t say how exactly
  • Meyer: ID is a good explanation for the sudden origin of animal body plans in the Cambrian era
  • Moderator: (to Meyer) Is the designer God? Is the designer the Christian God?
  • Meyer: No, ID theory is an inference that is rooted in scientific evidence, not in a religious text
  • Meyer: ID can be inferred from the origin of biological information and from molecular machines
  • Moderator: (to Ruse) Where do you disagree?
  • Ruse: Meyer is disingenuous because ID requires the designer to be God
  • Meyer: The biological evidence for intelligent design by itself does not implicate God
  • Meyer: The fine-tuning of the cosmos is intelligent design in physics, and that *would* require God
  • Moderator: (to Meyer) Explain what the Cambrian explosion is
  • Meyer: sudden origin of 36 body plans in 10 million years 530 million years ago
  • Moderator: So you think that 36 body plans in 10 million years is too sudden for Darwinian mechanisms to produce?
  • Meyer: Yes, for two reasons. One, there are no precursors prior to the start of the explosion in complexity
  • Meyer: And two, the complexity of animal life includes code, circuitry, hierarchies – best explained by a designer
  • Moderator: (to Ruse) Is it a problem for you?
  • Ruse: There is no peer-reviewed paper that denies that the Ediacaran fauna are precursors to the Cambrian animals
  • Ruse: There is no peer-reviewed paper that denies that microfossils are precursors to the Cambrian animals
  • Ruse: There is no peer-reviewed paper that denies that animal complexity goes from simple to complex in the fossil record
  • Ruse: There is no peer-reviewed paper that shows that the Cambrian explosion took place over a few million years
  • Ruse: There is no peer-reviewed paper that shows that there were complex organ types at the start of the Cambrian explosion
  • Ruse: There is no peer-reviewed paper that denies that we already have a materialist explanation for the Cambrian explosion
  • Ruse: everything is solved! nothing to see here! (folds arms and beams) I trust that my unsupported assertions have relieved your doubts, yes?
  • Moderator: Is intelligent design undermined by more recent science?
  • Meyer: no, there is an absence of precursor fossils in the period before the Cambrian explosion
  • Meyer: there are other things that make the problem even worse for naturalism, like information from epigenetics
  • Moderator: (to Ruse) Answer that
  • Ruse: He is just pulling out passages out of context because he is a creationist!
  • Moderator: The leftist New Yorker reviewer Gareth Cook says that the Cambrian explosion took tens of millions of years
  • Meyer: Actually, the peer-reviewed science is clear that the standard date is at most 10 million nears
  • Moderator: (to Ruse) Deny the mainstream date
  • Ruse: Well, Prothero says no! Ho ho ho! (folds arms) He just says it. No it’s not published in peer-reviewed research
  • Ruse: We know so much more than Darwin did, how could the progress of science disprove my materialist pre-supposition? It’s unpossible!
  • Moderator: (to Meyer) Isn’t ID pseudo-science?
  • Meyer: If we limit ourselves to materialist explanations only, then we cannot infer intelligence when we see artifacts like the Rosetta Stone
  • Meyer: wind and erosion is not an adequate explanation for certain systems – systems that are rich in information
  • Meyer: the best explanation is the explanation that relies on known causes – we know that intelligence produces information
  • Moderator: (to Meyer) so the intelligence is the best explanation of systems that have information?
  • Meyer: yes, think about software code – the best explanation of new computer instructions is an intelligence
  • Meyer: we have uniform and repeated experience of intelligence bringing new information into being, and new animals need new information
  • Moderator: (to Ruse) must science only work with natural explanations?
  • Ruse: intelligent design is religion! Ho ho ho ho! (folds arms)
  • Ruse: there is no a priori way of ruling out supernatural causes in order to explain nature
  • Ruse: We don’t need to introduce supernatural causes to explain information in living systems or in software code
  • Ruse: Steve is asking me to explain the Cambrian explosion, but why does he want me to explain that?
  • Ruse: How did anything start to fly? How did whales come? There, those questions explain the Cambrian explosion naturalistically
  • Ruse: Steve’s answer to explain new information is to bring in miracles, like when he said that new computer code requires God
  • Ruse: inferring intelligence as an explanation for information like the computer code is religion! God! Creationism! Prayer in schools!
  • Ruse: we have to keep looking for naturalistic explanations for the Big Bang, the DNA, the fine-tuning, the Cambrian fossils, etc.
  • Ruse: we are never justified in inferring an intelligence to explain information, because that would deny my religion of materialism
  • Moderator: (to Ruse) what are the requirements for a theory to be scientific?
  • Ruse: any explanation has to be naturalistic, because I am an atheist and that’s my religion, and we can’t go against my religion
  • Ruse: it’s “really stupid” to infer God as the explanation of the creation of the entire physical universe or the cosmic fine-tuning
  • Moderator: (to Meyer) why is intelligent design so popular when we have court cases saying it is not science?
  • Meyer: the Discovery Institute does not have an agenda to teach intelligent design in public schools
  • Meyer: intelligent design is about inferring intelligence as a causal explanation for information in living systems, and elsewhere
  • Moderator: (to Ruse) are evolutionists unwilling to entertain the possibility of intelligence being the best explanation?
  • Ruse: scientists have to make sure that that all their explanations don’t go outside of the materialist reservation
  • Ruse: intelligent design is evangelical Christianity dressed up to look like science, the Dover judge said so
  • Ruse: Meyer is disingenuous! Ho ho ho ho ho! (folds arms contentedly)
  • Meyer: first, judges don’t decide science, evidence decides science
  • Meyer: the Dover people made a mistake by trying to go to the courts to get things into the schools
  • Meyer: intelligent design is about research, writing books and papers based on what we learn from science
  • Moderator: (to Ruse) is intelligent design dangerous?
  • Ruse: yes, intelligent design is about politics, it’s not about cosmic fine-tuning, origin of life, molecular machines or Cambrian explosion
  • Ruse: intelligent design is about abstinence, prayer in schools, burdening women with unwanted babies and male-female marriage
  • Ruse: my reason for opposing ID is the socially conservative agenda which emerges from protein folding probability calculations
  • Ruse: I don’t want to be drafted to fight in Vietnam, I don’t want them to take away my drugs, etc. so that’s why I believe Darwinism
  • Moderator: (to Meyer) why do you want to take abortion away, you meany?
  • Meyer: actually, intelligent design is about science, and in any case National Review gave my book a bad review
  • Moderator: (to Ruse) are science and religion in conflict?
  • Ruse: well religion can just abstain from making any claims about the physical world, and just stick to subjective nonsense – that’s fair
  • Moderator: (to Meyer) isn’t all opposition to evolution rooted in fundamentalist religion?
  • Meyer: you can believe in Darwinism and be a theist, but the real reason for doubting Darwinism is the scientific evidence, not religion

Tell me how you think Dr. Meyer did in the comments. I think that Ruse is a Darwinist because he views it as a way to push people away from the conservative morality and politics. But he’s a nice guy, and I appreciate him debating the issue. Things are tough right now for his side.

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Study confirms that predictions about junk DNA by materialists are false

First, let’s see what Darwinian evolutionists predict about junk DNA, before we look at what the experiments show.

Here’s biologist John Timmer to explain the orthodox Darwinian view of DNA from 2007:

Personally, I fall into the “it’s all junk” end of the spectrum. If almost all of these sequences are not conserved by evolution, and we haven’t found a function for any of them yet, it’s hard to see how the “none of it’s junk” view can be maintained. There’s also an absence of support for the intervening view, again because of a lack of evidence for actual utility. The genomes of closely related species have revealed very few genes added from non-coding DNA, and all of the structural RNA we’ve found has very specific sequence requirements. The all-junk view, in contrast, is consistent with current data.

Got that? According to Darwinists, DNA is almost entirely junk – this is what is consistent with the view that creatures have evolved through a process of random mutation and selection. The estimates that I’ve seen from evolutionary biologists range from 95% to 99% junk. Now let’s compare the religion with science, and separate mythology from reality.

Now let’s compare that with intelligent design theorist William Dembski’s view of “junk” DNA, from 1998:

Even if we have a reliable criterion for detecting design, and even if that criterion tells us that biological systems are designed, it seems that determining a biological system to be designed is akin to shrugging our shoulders and saying God did it. The fear is that admitting design as an explanation will stifle scientific inquiry, that scientists will stop investigating difficult problems because they have a sufficient explanation already.

But design is not a science stopper. Indeed, design can foster inquiry where traditional evolutionary approaches obstruct it. Consider the term “junk DNA.” Implicit in this term is the view that because the genome of an organism has been cobbled together through a long, undirected evolutionary process, the genome is a patchwork of which only limited portions are essential to the organism. Thus on an evolutionary view we expect a lot of useless DNA. If, on the other hand, organisms are designed, we expect DNA, as much as possible, to exhibit function. And indeed, the most recent findings suggest that designating DNA as “junk” merely cloaks our current lack of knowledge about function… Design encourages scientists to look for function where evolution discourages it.

Now let’s look at the experimental evidence and see whose prediction was proven right by the progress of science.

Science Daily reports on a recent study that confirms the previous study that falsified Darwinian predictions about junk DNA.

Excerpt:

Researchers from the Gene and Stem Cell Therapy Program at Sydney’s Centenary Institute have confirmed that, far from being “junk,” the 97 per cent of human DNA that does not encode instructions for making proteins can play a significant role in controlling cell development.

[...]Using the latest gene sequencing techniques and sophisticated computer analysis, a research group led by Professor John Rasko AO and including Centenary’s Head of Bioinformatics, Dr William Ritchie, has shown how particular white blood cells use non-coding DNA to regulate the activity of a group of genes that determines their shape and function. The work is published today in the scientific journalCell.

“This discovery, involving what was previously referred to as “junk,” opens up a new level of gene expression control that could also play a role in the development of many other tissue types,” Rasko says. “Our observations were quite surprising and they open entirely new avenues for potential treatments in diverse diseases including cancers and leukemias.”

Now, this is yet another falsification of Darwinism, to go with the other papers that I keep posting about new research that falsifies Darwinism. How many papers do we need to falsify Darwinism? I think if you are in an argument over Darwinism, and you produce these articles, then you win, so long as the other person cannot produce anything. It’s also a good idea to couple these pieces of evidence with a positive case for intelligent causes operating during the origin of life and the Cambrian explosion.

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Stephen C. Meyer debates Peter D. Ward on intelligent design and evolution

The speakers

Stephen C. Meyer is director of the Discovery Institute’s Center for Science and Culture (CSC) and a founder both of the intelligent design movement and of the CSC, intelligent design’s primary intellectual and scientific headquarters. Dr. Meyer is a Cambridge University-trained philosopher of science, the author of peer-reviewed publications in technical, scientific, philosophical and other books and journals. His signal contribution to ID theory is given most fully in Signature in the Cell: DNA and the Evidence for Intelligent Design, published by HarperOne in June 2009.

Graduating from Whitworth College in Spokane, Washington, in 1981 with a degree in physics and earth science, he later became a geophysicist with Atlantic Richfield Company (ARCO) in Dallas, Texas. From 1981 to 1985, he worked for ARCO in digital signal processing and seismic survey interpretation. As a Rotary International Scholar, he received his training in the history and philosophy of science at Cambridge University, earning a PhD in 1991. His thesis offered a methodological interpretation of origin-of-life research.

Peter D. Ward, Ph.D., is a paleontologist and professor in the Departments of Geology and Biology at the University of Washington in Seattle. He also serves as an adjunct professor of zoology and astronomy. His research specialties include the Cretaceous–Tertiary extinction event and mass extinctions generally. His books include the best-selling “Rare Earth: Why Complex Life Is Uncommon in the Universe” (co-author Donald Brownlee, 2000), “Under a Green Sky: Global Warming, the Mass Extinctions of the Past, and What They Can Tell Us About Our Future” (2007), and “The Medea Hypothesis: Is Life on Earth Ultimately Self-Destructive?” (2009).

The debate

Here’s the video of the debate:

The debate itself starts at around 8:19, after all the moderators have spoken.

The debate is focused on disagreements about scientific evidence.

Even though Peter Ward is an atheist, he has co-written a fabulous book that I own and have read called “Rare Earth: Why Complex Life is Uncommon in the Universe“. I really recommend getting this book, as it is a great book by two non-theists on the habitability argument. It’s sort of a secular precursor to Jay Richards’ and Guillermo Gonzalez’s “The Privileged Planet: How Our Place in the Cosmos is Designed for Discovery“. The habitability argument is a really neglected argument, but it’s a good one.

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Does intelligent design commit the “God-of-the-gaps” fallacy?

Stephen C. Meyer explains, with reference to his newest book “Darwin’s Doubt”. He is responding to a critical review of the book published in Science.

Here’s the relevant part of the review:

Meyer’s scientific approach is purely negative. He argues that paleontologists are unable to explain the Cambrian explosion, thus opening the door to the possibility of a designer’s intervention. This, despite his protest to the contrary, is a (sophisticated) “god of the gaps” approach, an approach that is problematic in part because future developments often provide solutions to once apparently difficult problems.

And here’s part of Meyer’s response:

[B]y claiming that my approach is a purely negative one based solely upon “gaps” in our knowledge or in the evolutionary account of the Cambrian explosion, Marshall implies that Darwin’s Doubt makes a fallacious kind of argument known to logicians as an “argument from ignorance.” Arguments from ignorance occur when evidence against a proposition X is offered as the sole (and conclusive) grounds for accepting some alternative proposition Y. Arguments from ignorance make an obvious logical error. They omit a necessary kind of premise, a premise providing positive support for the conclusion, not just negative evidence against an alternative conclusion. In an explanatory context, arguments from ignorance have the form:

Premise One: Cause X cannot produce or explain evidence E.

Conclusion: Therefore, cause Y produced or explains E.

Critics of intelligent design often claim that the case for intelligent design commits this fallacy. They claim that design advocates use our present ignorance of any materialistic cause of specified or functional information (for example) as the sole basis for inferring an intelligent cause for the origin of such information in biological systems. For example, Michael Shermer represents the case for intelligent design as follows: “Intelligent design … argues that life is too specifically complex (complex structures like DNA) … to have evolved by natural forces. Therefore, life must have been created by. . . an intelligent designer.” In short, Shermer claims that ID proponents argue as follows:

Premise: Materialistic causes or evolutionary mechanisms cannot produce novel biological information.

Conclusion: Therefore, an intelligent cause produced specified biological information.

Marshall echoes Shermer’s criticism. But the inference to design as developed in Darwin’s Doubt does not commit this fallacy.

Why not? Because it argues that the best explanation of an effect in nature – new information -is an intelligent cause, and that we are familiar with how these intelligent causes operate already.

More:

[T]he book makes a positive case for intelligent design as an inference to the best explanation for the origin of the genetic (and epigenetic) information necessary to produce the first forms of animal life (as well as other features of the Cambrian animals such as the presence of genetic regulatory networks that function as integrated circuits during animal development). It advances intelligent design as the best explanation not only because many lines of evidence now cast doubt on the creative power of unguided evolutionary mechanisms, but also because of our positive, experience-based knowledge of the powers that intelligent agents have to produce as digital and other forms of information as well as integrated circuitry. As I argue in Chapter 18 of Darwin’s Doubt:

Intelligent agents, due to their rationality and consciousness, have demonstrated the power to produce specified or functional information in the form of linear sequence-specific arrangements of characters. Digital and alphabetic forms of information routinely arise from intelligent agents. A computer user who traces the information on a screen back to its source invariably comes to a mind — a software engineer or programmer. The information in a book or inscription ultimately derives from a writer or scribe. Our experience-based knowledge of information flow confirms that systems with large amounts of specified or functional information invariably originate from an intelligent source. The generation of functional information is “habitually associated with conscious activity.” Our uniform experience confirms this obvious truth.

Thus, the inadequacy of proposed materialistic evolutionary causes or mechanisms forms only part of the basis of the argument for intelligent design. We also know from broad and repeated experience that intelligent agents can and do produce information-rich systems and integrated circuitry. We have positive experience-based knowledge of a cause sufficient to generate new specified information and integrated circuitry, namely, intelligence. We are not ignorant of how information or circuitry arises. We know from experience that conscious, rational agents can create such information-rich structures and systems. To again quote information theorist Henry Quastler: “creation of new information is habitually associated with conscious activity.” Indeed, whenever large amounts of specified or functional information are present in an artifact or entity whose causal story is known, invariably creative intelligence — intelligent design — played a role in the origin of that entity. Thus, when we encounter a large discontinuous increase in the functional information content of the biosphere as we do in the Cambrian explosion, we may infer — based on our knowledge of established cause-effect relationships — that a purposive intelligence operated in the history of life to produce the functional information necessary to generate those forms of animal life.

Instead of exemplifying a fallacious form of argument in which design is inferred solely from a negative premise, the argument for intelligent design formulated in Darwin’s Doubt takes the following form:

Premise One: Despite a thorough search and evaluation, no materialistic causes or evolutionary mechanisms have demonstrated the power to produce large amounts of specified or functional information (or integrated circuitry).

Premise Two: Intelligent causes have demonstrated the power to produce large amounts of specified/functional information (and integrated circuitry).

Conclusion: Intelligent design constitutes the best, most causally adequate, explanation for the specified/functional information (and circuitry) that was necessary to produce the Cambrian animals.

I do think it’s very important for Christians to make their case for God based on the progress of science.

If you are going to argue for God, you want to use arguments like these:

  1. origin of the universe
  2. cosmic fine-tuning
  3. origin of life building blocks
  4. biological information at origin of life
  5. biological information at Cambrian explosion
  6. galactic fine-tuning
  7. stellar fine-tuning
  8. observed limits to mutation-driven change
  9. mental effort studies
  10. corroborated NDEs

And so on.

Each of these arguments is based on what we know about nature. They are not based on gaps in our knowledge at all. The more we do science, the more evidence we get for each argument. For example, at one point we only had redshift for the beginning of the universe (#1), but then we added light element abundance predictions and the cosmic microwave background radiation. For the cosmic fine-tuning (#2), we started with the fine-tuning of gravity, and then added more examples, like the cosmological constant. In each case, the continuous progress of science strengthened the need for a Creator/Designer. The more we know from science about how nature works, the stronger the case for Christian theism gets.

It’s the atheists who are now taking refuge in the gaps and holding out speculations as a way of maintaining their atheism against the science. It’s the atheists who are hoping for aliens, multiverses, undiscovered fossils, and so on. There is no God-of-the-Gaps anymore. There’s only Atheism-of-the-Gaps.

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