How biological convergence falsifies Darwinian evolution

Cornelius Hunter, a software engineer / biologist with a Ph.D in bioinformatics from UIUC explains the latest discovery of biological convergence on his blog. (H/T Tweet from J. Warner Wallace)

Excerpt:

The theory of evolution states that the species arose spontaneously, one from another via a pattern of common descent. This means the species should form an evolutionary tree, where species that share a recent common ancestor, such as two frog species, are highly similar, and species that share a distant common ancestor, such as humans and squids, are very different. But the species do not form such an evolutionary tree pattern. In fact this expectation has been violated so many times it is difficult to keep track. These violations are not rare or occasional anomalies, they are the rule. Entire volumes have been written on them. Many examples are the repeated designs found in what, according to evolution, must be very distant species. Such evolutionary convergence is biology’s version of lightning striking twice. To explain this evolutionists must say that random mutations just happened to hit upon the same detailed, intricate design at different times, in different parts of the world, in different ecological niches, and so forth. The idea that the most complex designs we know of would spontaneously arise by themselves is, itself, not scientifically motivated and a real stretch of the imagination. But for the same intricate designs to arise independently by chance is even more of a stretch. That is why evolutionist’s claim this week that they have found evidence for convergent evolution was so intriguing.

[...]Though evolutionists sometimes deny biological convergence, it is a scientific fact. And a paper from this week added yet another example:

In mammals, hearing is dependent on three canonical processing stages: (i) an eardrum collecting sound, (ii) a middle ear impedance converter, and (iii) a cochlear frequency analyzer. Here, we show that some insects, such as rainforest katydids, possess equivalent biophysical mechanisms for auditory processing. Although katydid ears are among the smallest in all organisms, these ears perform the crucial stage of air-to-liquid impedance conversion and signal amplification, with the use of a distinct tympanal lever system. Further along the chain of hearing, spectral sound analysis is achieved through dispersive wave propagation across a fluid substrate, as in the mammalian cochlea. Thus, two phylogenetically remote organisms, katydids and mammals, have evolved a series of convergent solutions to common biophysical problems, despite their reliance on very different morphological substrates.

It is another curious example of biological convergence, so rather than attempt to deny the undeniable, evolutionists now claim it as another confirmation of evolution.

I’m a software engineer, and we re-use components all the time for different programs that have no “common ancestor”. E.g. – I can develop my String function library and use it in my web application and my Eclipse IDE plug-in, and those two Java programs have no common ancestry, but they do have a common designer. So you find the same bits in two different programs because I am the developer of both programs.

Previously, I blogged about another example of convergence reported by Science Daily. One of the predictions of intelligent design theory is that examples of convergence, which is really just re-use of common code by the designer, will be everywhere in nature. And that predictions just keeps getting confirmed as science marches forward, and the primitive religion of naturalism retreats.

Filed under: News, Ancestor, Ancestry, Bioinformatics, Biological Convergence, Biology, Common Ancestry, Common Design, Common Designer, Computer Science, Convergence, Convergent Evolution, Convergent Trait, Darwinism, Design, Design Patterns, Designer, DNA, Evolution, Feature, Gene, Genetics, Information Theory, Intelligent Design, Mutation, Phenotype, Phylogeny, Selection, Structure, Trait

Science Daily reports on genetic convergence in bats and whales

We have to start this post with the definition of convergence in biology.

In evolutionary biology, convergent evolution is the process whereby organisms not closely related (not monophyletic), independently evolve similar traits as a result of having to adapt to similar environments or ecological niches.

It is the opposite of divergent evolution, where related species evolve different traits.

On a molecular level, this can happen due to random mutation unrelated to adaptive changes; see long branch attraction. In cultural evolution, convergent evolution is the development of similar cultural adaptations to similar environmental conditions by different peoples with different ancestral cultures. An example of convergent evolution is the similar nature of the flight/wings of insects, birds, pterosaurs, and bats.

All four serve the same function and are similar in structure, but each evolved independently.

Jonathan Wells explains the problem that convergence poses for naturalistic evolution:

Human designers reuse designs that work well. Life forms also reuse certain structures (the camera eye, for example, appears in humans and octopuses). How well does this evidence support Darwinian evolution? Does it support intelligent design more strongly?

Evolutionary biologists attribute similar biological structures to either common descent or convergence. Structures are said to result from convergence if they evolved independently from distinct lines of organisms. Darwinian explanations of convergence strain credulity because they must account for how trial-and-error tinkering (natural selection acting on random variations) could produce strikingly similar structures in widely different organisms and environments. It’s one thing for evolution to explain similarity by common descent—the same structure is then just carried along in different lineages. It’s another to explain it as the result of blind tinkering that happened to hit on the same structure multiple times. Design proponents attribute such similar structures to common design (just as an engineer may use the same parts in different machines). If human designers frequently reuse successful designs, the designer of nature can surely do the same.

I’m a software engineer, and we re-use components all the time for different programs that have no “common ancestor”. E.g. – I can dump develop my String function library and use it in my web application and my Eclipse IDE plug-in, and those two Java programs have nothing in common. So you find the same bits in two different programs because I am the developer of both programs. But the two programs don’t extend from a common program that was used for some other purpose – they have no “common ancestor” program.

Now with that in mind, take a look at this post from Evolution News.

Excerpt:

Earlier this year I wrote about how convergent genetic evolution is highly unlikely under neo-Darwinism, but makes perfect sense if you allow common design. An article in ScienceDaily titled “In Bats and Whales, Convergence in Echolocation Ability Runs Deep,” points to evidence that, in my opinion, might be best explained by common design.

According to the standard mammalian phylogeny, the common ancestor of bats and whales was not capable of echolocation. Thus, the ability to echolocate must have evolved independently, and bat and whale echolocation is often cited by evolutionists as a textbook example of convergent evolution. However, the ScienceDaily article reports that these similarities are not just phenotypic but extend down into the level of the gene sequences:

two new studies in the January 26th issue of Current Biology, a Cell Press publication, show that bats’ and whales’ remarkable ability and the high-frequency hearing it depends on are shared at a much deeper level than anyone would have anticipated — all the way down to the molecular level

Just as I noted that convergent genetic evolution was said to be “surprising” under neo-Darwinian thinking, this article reports, “The discovery represents an unprecedented example of adaptive sequence convergence between two highly divergent groups and suggests that such convergence at the sequence level might be more common than scientists had suspected.”

The typical Darwinist tack is to call similar structures “superficially similar”. I.e. – the appearance (phenotypes) are similar, but at the genotype (code) level, there is nothing in common. They have to say that because there is no common ancestor who shares the structure, so the biological information CANNOT be similar. A naturalistic theory can’t accommodate similarities at the genetic level unless there is a shared common ancestor who has those instructions. But guess what? When you actually take a closer look at the evidence… the biological information IS similar between bats and whales – AND THEY DON’T SHARE A COMMON ANCESTOR. So it exactly like the software design scenario, where the designer has put the same bits into two programs that were developed independently and don’t extend from a common program.

The Science Daily article explains more:

“The natural world is full of examples of species that have evolved similar characteristics independently, such as the tusks of elephants and walruses,” said Stephen Rossiter of the University of London, an author on one of the studies. “However, it is generally assumed that most of these so-called convergent traits have arisen by different genes or different mutations. Our study shows that a complex trait — echolocation — has in fact evolved by identical genetic changes in bats and dolphins.”

[...]“We were surprised by the strength of support for convergence between these two groups of mammals and, related to this, by the sheer number of convergent changes in the coding DNA that we found,” Rossiter said.

Read the whole thing at Evolution News. This is quality work by Casey Luskin.

Filed under: News, Ancestor, Ancestry, Bat, Class, Code, Coding, Common Ancestry, Common Design, Common Designer, Component, Convergence, Convergent Evolution, Convergent Trait, Darwinism, Design, Design Patterns, Designer, DNA, Echo-Location, Eclipse, Engineer, Evolution, Eye, Feature, Gene, Genetics, J2EE, Jar, Java, JEE, Library, Mutation, Octopus, Phenotype, Phylogeny, Plug-In, Programming, Re-usability, Re-Use, Re-Useability, Research, Selection, Software, Software Development, Software Engineering, Sonar, Structure, Study, SWT, Trait, Web Application, Whale

Is the presupposition of naturalism a science stopper?

UPDATE: Welcome readers from 4Simpsons! Thanks for the link Neil!

In cosmology, we had to wait decades for the theism-friendly big bang theory to beat out atheism-friendly theories like the eternal universe model, the steady-state model, the oscillating model, etc. Piles of taxpayer money wasted trying to prove atheistic flights of fancy. But in the end, the evidence for the big bang was too much for the atheistic theories, and we beat them out.

Junk DNA

And here is another example of how atheism is bad for scientific inquiry: “Junk DNA”.

The purpose of the genome is to contain the instructions that allow the cell to build functional sequences of smaller components. If the sequences are done right, you get a folded-up protein that can be used for all kinds of things.

But what those parts of the genome that don’t code for proteins? Well, atheists have been calling them “Junk DNA” and hailing it as proof that there is no designer to life. I can remember Christian groups like Reasons to Believe predicting that a purpose for “Junk DNA” would be found. But atheists pooh-pooh’d that idea. Gee, I wonder who was right? The same people who are always right: THEISTS.

Denyse O’Leary cites this Princeton University press release on Post-Darwinist:

Now researchers from Princeton University and Indiana University who have been studying the genome of a pond organism have found that junk DNA may not be so junky after all. They have discovered that DNA sequences from regions of what had been viewed as the “dispensable genome” are actually performing functions that are central for the organism. They have concluded that the genes spur an almost acrobatic rearrangement of the entire genome that is necessary for the organism to grow.

…The term “junk DNA” was originally coined to refer to a region of DNA that contained no genetic information. Scientists are beginning to find, however, that much of this so-called junk plays important roles in the regulation of gene activity. No one yet knows how extensive that role may be.

She’s got a stack of other related links at the bottom of the post.

Commenter ECM also sent me this story from Cornelius Hunter’s new blog.

Excerpt:

One problem with evolution is its strong bias toward viewing everything in biology as a kludge. When a newly discovered structure is examined, evolutionists take one look and conclude it is leftover junk. After all, blind, unguided mutations and other processes just happened to produce everything we see. The evolutionist’s going in position is that biology is a fluke. We’re lucky anything works.

Hunter then cites this passage from some naturalist researchers who study “junk DNA”:

Here we have a molecule that serves an important role in how cells function and survive, but it contains these puzzling ‘junk’ sequences that don’t seem to have any apparent purpose. Our work suggests that this disorder is really a way of creating flexibility, allowing the protein to function as a molecular switch, a process that is thought to go wrong in certain diseases.

Evolution has provided researchers with convenient modular structures, areas that are repeated over and over again to make up proteins, and so we tend to dismiss the interspersed disordered sequences that don’t seem to have any definable structure. Here we show that the weak molecular interactions in a disorganized protein sequence are essential in giving this protein its unique attributes.

Know what? If you substitute “Flying Spaghetti Monster” in there for “Evolution”, it makes just as much sense! Try it! Evolution causes toothpaste to come out of the toothpaste tube when you squeeze it, and Shakespearean rhyming couplets to rhyme, and my Java code to compile. It’s all evolution!

Conclusion

Atheists, always remember this quote from agnostic NASA astronomer Robert Jastrow, regarding the progress of science:

For the scientist who has lived by his faith in the power of reason, the story ends like a bad dream. He has scaled the mountains of ignorance; he is about to conquer the highest peak; as he pulls himself over the final rock, he is greeted by a band of theologians who have been sitting there for centuries.

In the 1920s, there was no theory about a universe that begins to exist out of nothing, no fine-tuning, no DNA, no Cambrian explosion, nothing. Then science progressed, reducing atheism to a kind of childish delusion, still believed by ignorant snake-handlers and people with certain persistent moral, … ah… issues. But that’s what psychiatrists are for!

Science is always for us, it’s never for you. You have faith. Blind faith. We have all the evidence. We invented science, and every new discovery makes your materialism look more silly and naive… you bravely hold out hope for some hopeful Flying Spaghetti Monster to swoop in and rescue your atheism from the big, bad mind-independent reality. When will you grow up?

There is no Flying Spaghetti Monster!

Filed under: Commentary, A Priori, Assumption, Big Bang, Complexity, Cosmology, Design, DNA, Evolution, Flying, Function, Functional, Genome, Junk, Materialism, Monster, Naturalism, Presumption, Progress, Protein, Rule, Science, Scientific, Sequence, Spaghetti, Specified, Stopper, Structure, Transposon